Publications

    2018

  1. Shu X, Zang X, Liu X, Jie Yang* and Jin Wang*. Predicting MicroRNA Mediated Gene Regulation between Human and Viruses. Cells 2018 Aug 8.PubMed
  2. Li X, Fu Z, Liang H, Wang Y, Qi X, Ding M, Sun X, Zhou Z Huang Y, Gu H, Li L, Chen X, Li D, Zhao Q, Liu F, Wang H, Wang J*, Zen K*, Zhang CY*. H5N1 influenza virus-specific miRNA-like small RNA increases cytokine production and mouse mortality via targeting poly(rC)-binding protein 2. Cell Res. 28(2):157-171, 2018.PubMed
  3. Xu Hua, Rongjun Tang, Xiuxiu Xu, Zhi Wang, Qi Xu, Luxiao Chen, Edgar Wingender, Jie Li*, Chenyu Zhang* and Jin Wang*. mirTrans: a resource of transcriptional regulation on microRNAs for human cell lines. Nucleic Acids Research 2018 Jan 4; 46(Database issue): D168–D174.PubMed
  4. 2016

  5. Xu Hua, Luxiao Chen, Jin Wang*, Jie Li* and Edgar Wingender*,Identifying cell-specific microRNA transcriptional start sites. Bioinformatics 2016, 32(16), 2403-10.PubMed
  6. 2015

  7. Pengping Li, Yuebing Hu, Jiao Yi, Jie Li*, Jie Yang* and Jin Wang*,Identification of potential biomarkers to differentially diagnose solid pseudopapillary tumors and pancreatic malignancies via a gene regulatory network. Journal of Translational Medicine 2015, 13:361.PubMed
  8. Xiaoshuang Liu, Guangxin Zhang, Changqing Zhang*, Jin Wang *,Predicted trans-acting siRNAs in the human brain.International Journal of Molecular Sciences2015, 16(2), 3377-3390.PubMed
  9. 2013

  10. Pengping Li, Xu Hua, Zhen Zhang, Jie Li, Jin Wang, Characterization of regulatory features of housekeeping and tissue-specific regulators within tissue regulatory networks. BMC Systems Biology 2013,7(1):112.   PubMed
  11. Zuguang Gu, Jin Wang, CePa: an R package for finding significant pathways weighted by multiple network centralities. Bioinformatics 2013, 29(5):658:60.PubMed
  12. 2012

  13. Chenfeng He, Ying-Xin Li, Guangxin Zhang, Zuguang Gu, Rong Yang, Jie Li, Zhi John Lu, Zhi-Hua Zhou, Chenyu Zhang and Jin Wang, MiRmat: Mature microRNA Sequence Prediction, PLoS ONE 2012, 7(12): e51673, Journal site
  14. Changqing Zhang, Guangping Li, Jin Wang and Jinggui Fang, Identification of trans-acting siRNAs and their regulatory cascades in grapevine, Bioinformatics 2012, 28(20): 2561–2568, PubMed
  15. Jie Li, Xu Hua, Martin Haubrock, Jin Wang and Edgar Wingender, The architecture of the gene regulatory networks of different tissues, Bioinformatics 2012, 28(18): i509–i514, PubMed
  16. Qilai Huang, Chenguang Gong, Jiahuang Li, Zhu Zhuo, Yuan Chen, Jin Wang, Zi-Chun Hua, Distance and Helical Phase Dependence of Synergistic Transcription Activation in cis-Regulatory Module, PLoS ONE 2012, 7(1): e31198, PubMed
  17. Zuguang Gu, Jialin Liu, Kunming Cao, Junfeng Zhang, Jin Wang. Centrality-based Pathway Enrichment: a Systematic Approach for Finding Signicant Pathways Dominated by Key Genes. BMC Systems Biology 2012, 6:56, PubMed
  18. Zuguang Gu, Chenyu Zhang, Jin Wang. Gene Regulation is Governed by a Core Network in Hepatocellular Carcinoma. BMC Systems Biology 2012, 6:32,  PubMed
  19. 2011

  20. Jin Wang, Martin Haubrock, Kun-Ming Cao, Xu Hua, Chen-Yu Zhang, Edgar Wingender and Jie Li. Regulatory coordination of clustered microRNAs based on microRNA-transcription factor regulatory network. BMC Systems Biology 2011, 5:199,  PubMed
  21. Zuguang Gu, Jie Li, Song Gao, Ming Gong, Junling Wang, Hua Xu, Chenyu Zhang, Jin Wang. InterMitoBase: An annotated database and analysis platform of protein-protein interactions for human mitochondria. BMC Genomics. 2011, 12:335, [PubMed]
  22. Changqing Zhang, Jin Wang, Xu Hua, Jinggui Fanf, Huaiqiu Zhu and Xiang Gao. A mutation degree model for the identification of transcriptional regulatory elements. BMC Bioinformatics. 2011, 12:262, [PubMed]
  23. Zuguang Gu, Chenfeng He, Jin Wang. Finding Significant Gene Sets with Weighted Distribution of Gene Expression. Bioinformatics and Biomedical Engineering, (iCBBE) 2011 5th International Conference, pp.1-5, 10-12 May 2011
  24. 2010

  25. Ming Gong, Jie Li, Meng Wang et al, The evolutionary trajectory of mitochondrial carrier family during metazoan evolution, BMC Evolutionary Biology, 2010, 10:282, [PubMed]
  26. LI Jie, GAO Song, WANG Jin, ZHANG Chenyu, Construction of comprehensive gene network for human mitochondria, Chinese Science Bulletin, 55(22): 2366-2372 (2010)
  27. Guanghong Zuo, Wenfei Li, Jian Zhang, et al, Folding of a Small RNA Hairpin Based on Simulation with Replica Exchange Molecular Dynamics, J. Phys. Chem. B, 114(17): 5835–5839 (2010), [PubMed]
  28. Before 2009

  29. Huaiqiu Zhu, Gang-Qing Hu, Yi-Fan Yang, Jin Wang and Zhen-Su She, MED: a new non-supervised gene prediction algorithm for bacterial and archaeal genomes, BMC Bioinformatics, 8:97 (2007). [PubMed]
  30. Gang Su, Binchen Mao and Jin Wang, MACO: A gapped-alignment scoring tool for comparing transcription factor binding sites, In Silico Biology, 6:0028 (2006). [PubMed]
  31. Gang Su, Binchen Mao, Jin Wang, A web server for transcription factor binding site prediction, Bioinformation, 1(5): 156-157 (2006). [PubMed]
  32. Huang QL, Chen C, Chen YZ, Gong CG, Cao L, Wang J, Hua ZC, Fusion protein between protein ZZ and red fluorescent protein DsRed and its application to immunoassays. Biotechnol Appl Biochem. 43(2): 121-7 (2006). [PubMed]
  33. Qi-Lai Huang, Cheng Chen, Yun-Zi Chen, ChenGuang Gong, Lin Cao, Jin Wang, Zi-Chun Hua, Application to immunoassays of the fusion protein between protein ZZ and enhanced green fluorescent protein, Journal of Immunological methods, 309:130-138 (2006). [PubMed]
  34. W.Xue, J.Wang, Z.Sheng, H.Zhu, Enrichment of transcriptional regulatory sites in non-coding genomic region, Bioinformatics, 20(4): 569-575 (2004). [PubMed]
  35. Huai-Qiu Zhu, Gang-Qing Hu, Zhwng-Qing Ouyang, Jin Wang, Zhen-Su She, Accuracy improvement for identifying translation initiation sites in microbial genomes, Bioinformatics, 20(18), 3308-17 (2004). [PubMed]
  36. X.Cang, J.Wang, A unique ATG triplet downstream of gene start in archaea: implications for translation initiation and evolution, Gene, Vol.327, 75-79 (2004). [PubMed]
  37. Johnson KM, Wang J, Smallwood A, et al., The immobilized template assay for measuring cooperativity in eukaryotic transcription complex assembly, METHOD ENZYMOL 380: 207-219 (2004). [PubMed]
  38. Zhengqing Ouyang, Huaiqiu Zhu, Jin Wang and Zhen-Su She,Multivariate Entropy Distance Method for Prokaryotic Gene Identification,Journal of Bioinformatics and Computational Biology, 2(2): 353-373 (2004). [PubMed]